| 1 | FK VIAGEM PŘÍBRAM a.s. | 19 | 10 | 7 | 2 | 37 | 33:13 | 20 |
| 2 | MFK Vyškov a.s. | 19 | 9 | 7 | 3 | 34 | 31:18 | 13 |
| 3 | MFK Karviná a.s. | 19 | 10 | 2 | 7 | 32 | 32:26 | 6 |
| 4 | SK Líšeň 2019, a.s. | 19 | 9 | 4 | 6 | 31 | 25:14 | 11 |
| 5 | Fotbalový klub Varnsdorf a. s. | 18 | 8 | 4 | 6 | 28 | 27:21 | 6 |
| 6 | MFK Chrudim a.s. | 18 | 6 | 7 | 5 | 25 | 20:17 | 3 |
| 7 | FC Sellier & Bellot Vlašim, a.s. | 19 | 7 | 3 | 9 | 24 | 31:29 | 2 |
| 8 | FK DUKLA Praha a. s. | 18 | 7 | 3 | 8 | 24 | 27:26 | 1 |
| 9 | FC VYSOČINA JIHLAVA, a.s. | 19 | 6 | 6 | 7 | 24 | 21:27 | -6 |
| 10 | SK Sigma Olomouc, a.s. B | 19 | 6 | 6 | 7 | 24 | 22:30 | -8 |
| 11 | FC SILON Táborsko a.s. | 18 | 5 | 7 | 6 | 22 | 16:23 | -7 |
| 12 | 1. SK Prostějov, fotbalový klub a.s. | 19 | 5 | 7 | 7 | 22 | 28:36 | -8 |
| 13 | Slezský fotbalový club Opava a.s. | 19 | 5 | 6 | 8 | 21 | 17:18 | -1 |
| 14 | FK TŘINEC a.s. | 19 | 5 | 6 | 8 | 21 | 21:30 | -9 |
| 15 | AC Sparta Praha fotbal, a.s. B | 19 | 6 | 3 | 10 | 21 | 17:27 | -10 |
| 16 | SK Slavia Praha - fotbal a.s. B | 19 | 5 | 4 | 10 | 19 | 26:39 | -13 |
