| 1 | MFK Karviná a.s. | 30 | 17 | 5 | 8 | 56 | 58:37 | 21 |
| 2 | MFK Vyškov a.s. | 30 | 14 | 10 | 6 | 52 | 45:29 | 16 |
| 3 | FK VIAGEM PŘÍBRAM a.s. | 30 | 14 | 9 | 7 | 51 | 48:32 | 16 |
| 4 | FK DUKLA Praha a. s. | 30 | 14 | 5 | 11 | 47 | 51:45 | 6 |
| 5 | SK Líšeň 2019, a.s. | 30 | 13 | 7 | 10 | 46 | 38:27 | 11 |
| 6 | Fotbalový klub Varnsdorf a. s. | 30 | 12 | 7 | 11 | 43 | 54:46 | 8 |
| 7 | FC SILON Táborsko a.s. | 30 | 11 | 9 | 10 | 42 | 39:43 | -4 |
| 8 | SK Sigma Olomouc, a.s. B | 30 | 10 | 9 | 11 | 39 | 41:46 | -5 |
| 9 | AC Sparta Praha fotbal, a.s. B | 30 | 11 | 6 | 13 | 39 | 32:39 | -7 |
| 10 | MFK Chrudim a.s. | 30 | 8 | 15 | 7 | 39 | 32:32 | 0 |
| 11 | FC Sellier & Bellot Vlašim, a.s. | 30 | 11 | 5 | 14 | 38 | 54:49 | 5 |
| 12 | 1. SK Prostějov, fotbalový klub a.s. | 30 | 9 | 9 | 12 | 36 | 39:57 | -18 |
| 13 | Slezský fotbalový club Opava a.s. | 30 | 8 | 10 | 12 | 34 | 26:29 | -3 |
| 14 | FC VYSOČINA JIHLAVA, a.s. | 30 | 9 | 7 | 14 | 34 | 37:51 | -14 |
| 15 | SK Slavia Praha - fotbal a.s. B | 30 | 8 | 8 | 14 | 32 | 42:56 | -14 |
| 16 | FK TŘINEC a.s. | 30 | 6 | 9 | 15 | 27 | 30:48 | -18 |
