| 1 | FK DUKLA Praha a.s. | 25 | 14 | 5 | 6 | 47 | 39:26 | 13 |
| 2 | MFK Vyškov a.s. | 25 | 13 | 7 | 5 | 46 | 42:29 | 13 |
| 3 | FC SILON Táborsko a.s. | 25 | 11 | 9 | 5 | 42 | 36:22 | 14 |
| 4 | SK Sigma Olomouc, a.s. B | 25 | 13 | 3 | 9 | 42 | 37:35 | 2 |
| 5 | MFK Chrudim a.s. | 25 | 10 | 7 | 8 | 37 | 45:41 | 4 |
| 6 | AC Sparta Praha fotbal, a.s. B | 25 | 10 | 5 | 10 | 35 | 45:41 | 4 |
| 7 | FC Sellier & Bellot Vlašim, a.s. | 25 | 8 | 11 | 6 | 35 | 34:30 | 4 |
| 8 | SK Líšeň 2019, a.s. | 25 | 8 | 9 | 8 | 33 | 29:30 | -1 |
| 9 | Slezský fotbalový club Opava a.s. | 25 | 9 | 6 | 10 | 33 | 27:29 | -2 |
| 10 | FK PŘÍBRAM a.s. | 25 | 10 | 3 | 12 | 33 | 28:37 | -9 |
| 11 | FC ZBROJOVKA BRNO, a.s. | 25 | 9 | 4 | 12 | 31 | 32:34 | -2 |
| 12 | FC VYSOČINA JIHLAVA, a.s. | 25 | 8 | 6 | 11 | 30 | 35:36 | -1 |
| 13 | FK VIKTORIA ŽIŽKOV a.s. | 25 | 8 | 5 | 12 | 29 | 36:45 | -9 |
| 14 | Fotbalový klub Varnsdorf a.s. | 25 | 6 | 10 | 9 | 28 | 42:42 | 0 |
| 15 | 1. SK Prostějov, fotbalový klub a.s. | 25 | 8 | 3 | 14 | 27 | 33:47 | -14 |
| 16 | SK Hanácká Slavia Kroměříž a.s. | 25 | 6 | 5 | 14 | 23 | 24:40 | -16 |
